Biological Application
Displaying: 3 Found: 34 Total: 34
Izhikevich-based Neuron Models
Description
Model that combines the biologically plausibility of Hodgkin-Huxley-type dynamics and the computational efficiency of integrate-and-fire neurons. It is capable of reproducing spiking and bursting behavior of known types of cortical neurons.
Formats
- Systems Biology Markup Language Level 3 Version 1 Core
- NeuroML 2 beta 3
- Systems Biology Markup Language Level 2 Version 5
Examples
Links
Publication
Metabolic Process
Description
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
Formats
- Systems Biology Markup Language Level 3 Version 1 Core
- CellML 1.1
- SBGN Process Description language Level 1 Version 1.3
- Pharmacometrics Markup Language Version 0.6
- Systems Biology Markup Language Level 2 Version 5
Examples
- A whole-body mathematical model of cholesterol metabolism and its age-associated dysregulation.
- Full-scale model of glycolysis in Saccharomyces cerevisiae
- Systematic construction of kinetic models from genome-scale metabolic networks.
- A semi-mechanistic model of the relationship between average glucose and HbA1c in healthy and diabetic subjects.
Links
Ontology
Models of a Vector
Description
Models of vector constructs for molecular biology.