CA1 pyramidal cell - Ferguson et al. 2014
Description
Ferguson KA, Huh CY, Amilhon B, Williams S, Skinner FK (2014) Simple, biologically-constrained CA1 pyramidal cell models using an intact, whole hippocampus context. F1000Res 3:104
Izhikevich-based models of CA1 pyramidal cells, with parameters constrained based on a whole hippocampus preparation. Strongly and weakly adapting models based on the experimental data have been developed. Code produces example model output.
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Cardiac sodium channel Markov model with temperature dependence and recovery from inactivation
Description
ABSTRACT: A Markov model of the cardiac sodium channel is presented. The model is similar to the CA1 hippocampal neuron sodium channel model developed by Kuo and Bean (1994. Neuron. 12:819 - 829) with the following modifications: 1) an additional open state is added; 2) open-inactivated transitions are made voltage-dependent; and 3) channel rate constants are exponential functions of enthalpy, entropy, and voltage and have explicit temperature dependence. Model parameters are determined using a simulated annealing algorithm to minimize the error between model responses and various experimental data sets. The model reproduces a wide range of experimental data including ionic currents, gating currents, tail currents, steady-state inactivation, recovery from inactivation, and open time distributions over a temperature range of 10C to 25C. The model also predicts measures of single channel activity such as first latency, probability of a null sweep, and probability of reopening.
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Cellular consequences of HERG mutations in the long QT syndrome: precursors to sudden cardiac death.
Description
This model is according to the paper Cellular consequences of HEGR mutations in the long QT syndrome: precursors to sudden cardiac death. The author used Markovian model of cardiac Ikr in the paper. Figure4B in the paper has been reproduced using CellDesigner3.5.1. The cell is depolarized to the indicated test potential for 250ms (from 50ms to 300ms) from a holding potential of -40mV and then repolarized to -40mV. Change the value for vtest from -30,-20,-10,0,10,20,30,40 for each simulation in order to produce the different cureve in the paper.