Standard Formats

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SBGN-ML 0.2

Systems Biology Graphical Notation - Markup Language - Milestone 2

Synopsis

The XML implementation of SBGN.

Description

The XML implementation of SBGN. It covers all three SBGN languages.

Publication Date

08/2015

Authors

Moodie, Stuart
Le Novère, Nicolas
Mi, Huaiyu
T. Bergmann, Frank
Demir, Emek
Schreiber, Falk
Sorokin, Anatoly
P. van Iersel, Martijn
C. Villéger, Alice
Czauderna, Tobias
E. Boyd, Sarah
Luna, Augustin
Dogrusoz, Ugur
Matsuoka, Yukiko
Funahashi, Akira
I. Aladjem, Mirit
Kitano, Hiroaki

Organizations

Biological Scales

Scale molecular cellular tissue organ organism ecosystem
Support unknown unknown unknown unknown unknown unknown

Spatial Representation

Spatial Representation Level Compartment Dimensions Gradients Spatial Structures
Support unknown unknown unknown unknown

Modeling Formalisms for this format

Software support for this format

Examples for this format

Advantage

  • Standardized graphical layout of a model

Modularity: no

Components Relation
Flat Network: no

Supported Math

Unit Support

Annotation Support

There are no biological applications available!

LibSBGN

Programming language

C++

Links

API

LibSBGN

LibSBGN

Systems Biology Graphical Notation (SBGN)

Description

Systems Biology Graphical Notation aims at representing networks of biochemical interactions in a standard and unambigious way.

Publication date

08/2008

Organizations

Links

Webpage

Publication

All formats for this class

no license information