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Modeling Formalism

Displaying: 3 Found: 9 Total: 31


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Deterministic Model


Description

Models in which no randomness is involved. The same input will always result in the same output.

Formats

  • Systems Biology Markup Language Level 3 Version 1 Core
  • CellML 1.1
  • Pharmacometrics Markup Language Version 0.6
  • NeuroML Version 1.8.1 Level 1 MorphML
  • NeuroML Version 1.8.1 Level 2 ChannelML
  • NeuroML Version 1.8.1 Level 2 Biophysics
  • NeuroML Version 1.8.1 Level 3 NetworkML
  • NeuroML 2 beta 3

Differential Algebraic Equation Model


Description

General form of (systems of) differential equations for vector–valued functions x in one independent variable.

Formats

  • Systems Biology Markup Language Level 3 Version 1 Core
  • CellML 1.1

Examples

  • Stortelder1997 - Thrombin Generation Amidolytic Activity
  • Nonlinearities make a difference: comparison of two common Hill-type models with real muscle

Links

Ontology

  • differential algebraic equation model

Hodgkin–Huxley Model


Formats

  • Systems Biology Markup Language Level 3 Version 1 Core
  • CellML 1.1
  • NeuroML Version 1.8.1 Level 2 ChannelML
  • NeuroML Version 1.8.1 Level 2 Biophysics
  • NeuroML 2 beta 3

Examples

  • A quantitative description of membrane current and its application to conduction and excitation in nerve. (SBML l3v1)
  • Hodgkin, Huxley, 1952 (CellML 1.1)
  • Hodgkin Huxley Tutorial (NeuroMl 2)

Links

Publication

  • A quantitative description of membrane current and its application to conduction and excitation in nerve
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