Standard Formats
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SBML Level 3 Packages
Systems Biology Markup Language Level 3 Packages
Synopsis
Description
SBML level 3 is a modular language with an extensible XML schema. The core functionality may be extended through individual packages. Only packages which are labeled as released are included.
List of included packages and their functionality*:
Hierarchical Model Composition: A means for defining how a model is composed from other models.
Flux Balance Constraints: Support for constraint-based (a.k.a. steady-state) models.
Groups: A means for grouping elements Layout: Support for storing the spatial topology of a network diagram: adjunct to the render package.
Qualitative Models: Support for models wherein species do not represent quantity of matter & processes are not reactions per se
For a complete list of available packages visit the SBML webpage.
(*15.02.2016 - http://sbml.org/Documents/Specifications)
Publication Date
Authors
Organizations
Biological Scales
Scale | molecular | cellular | tissue | organ | organism | ecosystem |
---|---|---|---|---|---|---|
Support | undefined | undefined | undefined | undefined | undefined | undefined |
Spatial Representation
Spatial Representation Level | Compartment | Dimensions | Gradients | Spatial Structures |
---|---|---|---|---|
Support | undefined | undefined | undefined | undefined |
Advantage
- Model components reusability
- Flexible component grouping
- Standardized graphical layout of a model
Modularity: yes
Components Relation
Flat Network:
no
Supported Math
MathML Support: no
Full MathML Support: no
Description
Math Support is part of the SBML core.
Unit Support
Unit Required: no
Support: undefined
Description
Annotation Support
Miriram Support: no
identifiers.org Support: no
Description
Annotation Support is part of the SBML core.
Biological
Application
Format
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---|---|---|
SBML Level 3 Packages |
Webpage
libSBML
Programming language
C++Dependend apis
- libSBML - Java
- libSBML - Python
- libSBML - Matlab
- libSBML - Octave
Links
API
Systems Biology Markup Language (SBML)
Description
Representation of biological processes as a set of processes, that are converting pools of entities into other pools entities.
Derived from
Publication date
Organizations
Links
Webpage
All formats for this class
not defined
Description
The licence agreement is not defined or could not be obtained.