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SBML Level 3 Packages
Systems Biology Markup Language Level 3 Packages
SBML level 3 is a modular language with an extensible XML schema. The core functionality may be extended through individual packages. Only packages which are labeled as released are included.
List of included packages and their functionality*:
Hierarchical Model Composition: A means for defining how a model is composed from other models.
Flux Balance Constraints: Support for constraint-based (a.k.a. steady-state) models.
Groups: A means for grouping elements Layout: Support for storing the spatial topology of a network diagram: adjunct to the render package.
Qualitative Models: Support for models wherein species do not represent quantity of matter & processes are not reactions per se
For a complete list of available packages visit the SBML webpage.
(*15.02.2016 - http://sbml.org/Documents/Specifications)
|Spatial Representation Level||Compartment||Dimensions||Gradients||Spatial Structures|
- Model components reusability
- Flexible component grouping
- Standardized graphical layout of a model
MathML Support: no
Full MathML Support: no
Math Support is part of the SBML core.
Unit Required: no
Miriram Support: no
identifiers.org Support: no
Annotation Support is part of the SBML core.
- libSBML - Java
- libSBML - Python
- libSBML - Matlab
- libSBML - Octave
libSBML - Java
Depends on apilibSBML
Systems Biology Markup Language (SBML)
Representation of biological processes as a set of processes, that are converting pools of entities into other pools entities.
All formats for this class
The licence agreement is not defined or could not be obtained.